PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 985aa    MW: 110621 Da    PI: 7.229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923915.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.7e-08436456425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C++fa+ G+C++G+ CkF+H
  XP_010923915.1 436 APCKYFAK-GHCRHGEDCKFSH 456
                     69******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-4363395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624370397IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-4370396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868432459IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4434458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6435457IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5436456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001437457IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MAENFRRRKS RWEMAETHFP NKVRKDNALP VKAVLSHDKE SKSSRSSFKY NHNQFSKWSD  60
MEGSNAPIHG DDFEARQLAT WSKRPKSPKW SDMESDHKGS KNSSWQPLSG SQSARGDDNI  120
SRDTAGWGTT VDQTNPDAWK QHKEGLKNSS LEPVSGIQST RGDDNVRRDT AGWGTALDQI  180
GPDAWKQCKE SLKDSSSEPV SGSHSARADD NVRRDAAGWG TVLDQTGPDA WRQHNHSVSP  240
DNVWNRSRRS RSRSPFKGLR HESESWNDRS RKGGRSAAPC RDFVADRHRT GGQFRYLREV  300
GSPRHSGRYH DNDATEIRKI RSERGRYSVH DNKEDIRDSL DQSNYSRNRF SRRHGNDSGG  360
EERHEVYKTS RSAGLCHDFA RGRCNRGSMC RYLHHDASSG GGPFRKDYPW ERTFDRRDVD  420
ASSFRQSVEP CRVTDAPCKY FAKGHCRHGE DCKFSHQVLP KAHSKERRDD DRWNTGLESE  480
RSPVWNGPKW GDETAPSWNG PKWGDESATS WDGPKWGDQA ATSQNDSKWG DVANMHAPNS  540
FQWMSDSNGA GDAASYSIGI EDYPIKSHHP PSTEPEKNNH QSLPKEVIEK ALPSHGQNMT  600
WEVPGKDQNV PSVTTETVVE GTCVQWHPGI MEEVLCGDGE ESENVHANSV KSQAAMKYSA  660
NNLQTVVSVH DQCFGESSQS HHLAPEPPDA QTITQNEQHQ QVLPQVPSNT NLTGQNQLCL  720
LPHNGQSQNL AEQSQHYLSV SPHVSPSEQV DSSNGQNHNS PILPPSAQPN QVSVSEQQCP  780
TSDGMRSVTP DPDSLLPVFT PISVEIKDPS TETLRETLNN SFSLPITDGP NEGNLNNTAD  840
LEEKLHSGKQ ESKHIEQDGD DNKKVSETEI GQRKKEEQIA QSKGVNAYAH IDGEGKRSRD  900
DKGVRMFKFA LVEHVKDMLK PTWKEGRLTK EVHKTIVKKV VEKVTSTLQD PTIPWTQERI  960
DVYLSCSKVK LNKLVQAYVQ KYGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923915.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
RefseqXP_010923916.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-13C3H family protein